论文标题

疏水相互作用在$β$ -Sheets折叠中的作用

The role of hydrophobic interactions in folding of $β$-sheets

论文作者

Li, Jiacheng, Ma, Xiaoliang, Zhang, Hongchi, Hou, Chengyu, Shi, Liping, Guo, Shuai, Liao, Chenchen, Zheng, Bing, Ye, Lin, Yang, Lin, He, Xiaodong

论文摘要

探索蛋白质折叠问题一直是分子生物学的长期挑战。蛋白质折叠高度取决于二级结构的折叠,作为铺平天然折叠途径的方式。 Here, we demonstrate that a feature of a large hydrophobic surface area covering most side-chains on one side or the other side of adjacent $β$-strands of a $β$-sheet is prevail in almost all experimentally determined $β$-sheets, indicating that folding of $β$-sheets is most likely triggered by multistage hydrophobic interactions among neighbored side-chains of unfolded polypeptides,启用$β$ -Sheets在水性环境中的显式物理折叠代码后可重复地折叠。 $β$ - 弯曲通常包含五种类型的残基,其侧链的暴露疏水比例相对较小,这被解释了,因为这些残基可以按顺序阻止邻居的侧链之间的疏水作用。因此,$β$ - 表的折叠的温度依赖性归因于疏水性强度的温度依赖性。通过实验可获得的数千种结果的生物信息学分析来验证,负责$β$ - 表折叠的基于疏水效应的机制。可以通过评估从$β$ strand-strand-strand-strand-strand-strand-strand-strand-strance的相互作用来解密氨基酸序列的折叠代码,从而根据$β$ strand-strand-strand-strand-strand-strand-strand-strand-strand-strand-strand oteraction评估疏水性相互作用。

Exploring the protein-folding problem has been a long-standing challenge in molecular biology. Protein folding is highly dependent on folding of secondary structures as the way to pave a native folding pathway. Here, we demonstrate that a feature of a large hydrophobic surface area covering most side-chains on one side or the other side of adjacent $β$-strands of a $β$-sheet is prevail in almost all experimentally determined $β$-sheets, indicating that folding of $β$-sheets is most likely triggered by multistage hydrophobic interactions among neighbored side-chains of unfolded polypeptides, enable $β$-sheets fold reproducibly following explicit physical folding codes in aqueous environments. $β$-turns often contain five types of residues characterized with relatively small exposed hydrophobic proportions of their side-chains, that is explained as these residues can block hydrophobic effect among neighbored side-chains in sequence. Temperature dependence of the folding of $β$-sheet is thus attributed to temperature dependence of the strength of the hydrophobicity. The hydrophobic-effect-based mechanism responsible for $β$-sheets folding is verified by bioinformatics analyses of thousands of results available from experiments. The folding codes in amino acid sequence that dictate formation of a $β$-hairpin can be deciphered through evaluating hydrophobic interaction among side-chains of an unfolded polypeptide from a $β$-strand-like thermodynamic metastable state.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源