论文标题

纳米孔 - 研究蛋白质动力学的多功能工具

Nanopores -- a Versatile Tool to Study Protein Dynamics

论文作者

Schmid, Sonja, Dekker, Cees

论文摘要

蛋白质是我们体内活跃的马匹。这些生物分子从DNA复制和一般的生物合成到代谢信号传导和环境传感执行所有重要的细胞功能。尽管现在很容易获得静态3D结构,但观察蛋白质的功能周期(涉及构象变化和相互作用)仍然非常具有挑战性,例如,由于整体平均。但是,时间分辨信息对于获得对蛋白质功能的机械理解至关重要。单分子技术(例如FRET和力光谱)提供了答案,但可以受到所需的标签,狭窄的时间带宽等限制。在这里,我们将电纳米孔检测描述为探测蛋白质动力学的工具。随着时间带宽的范围从微秒到几个小时,它涵盖了与蛋白质功能非常相关的特定时间表。首先,我们讨论了无标签的纳米孔实验,各种孔设计,仪器和纳米孔信号的特性的工作原理。在第二部分中,我们回顾了一些解决蛋白质科学研究问题的纳米孔实验,并将纳米孔与其他单分子技术进行了比较。我们希望使生化社区更容易接触电气纳米孔,并激发新的创意解决方案以一次解决各种蛋白质动力学 - 一次分子。

Proteins are the active working horses in our body. These biomolecules perform all vital cellular functions from DNA replication and general biosynthesis to metabolic signaling and environmental sensing. While static 3D structures are now readily available, observing the functional cycle of proteins - involving conformational changes and interactions - remains very challenging, e.g., due to ensemble averaging. However, time-resolved information is crucial to gain a mechanistic understanding of protein function. Single-molecule techniques such as FRET and force spectroscopies provide answers but can be limited by the required labelling, a narrow time bandwidth, and more. Here, we describe electrical nanopore detection as a tool for probing protein dynamics. With a time bandwidth ranging from microseconds to hours, it covers an exceptionally wide range of timescales that is very relevant for protein function. First, we discuss the working principle of label-free nanopore experiments, various pore designs, instrumentation, and the characteristics of nanopore signals. In the second part, we review a few nanopore experiments that solved research questions in protein science, and we compare nanopores to other single-molecule techniques. We hope to make electrical nanopore sensing more accessible to the biochemical community, and to inspire new creative solutions to resolve a variety of protein dynamics - one molecule at a time.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源