论文标题

数字图像处理以检测石质珊瑚的微妙运动

Digital image processing to detect subtle motion in stony coral

论文作者

Li, Shuaifeng, Roger, Liza M., Kumar, Lokander, Lewinski, Nastassja, Klein, Judith, Gagnon, Alex, Putnam, Hollie M., Yang, Jinkyu

论文摘要

珊瑚礁生态系统支持重大的生物学活动,并具有巨大的多样性,但它们面临着由人为活动和气候变化驱动的严重危机。珊瑚霍洛皮特(Coral Holobiont)的一个重要行为特征是珊瑚运动,它可能在进食,竞争,繁殖以及因此生存和适应性中起着至关重要的作用。因此,通过运动分析表征珊瑚行为将有助于我们理解基本的生物学和物理珊瑚功能。然而,在石质硬化珊瑚珊瑚珊瑚礁造成最大贡献的石质硬化珊瑚珊瑚的组织运动是微妙的,人眼和常用的成像技术都可能是无法察觉的。在这里,我们提出并采用系统的方法来量化和可视化棘皮动物山脉蒙蒂普拉(Montipora caprigornis)中一系列光和黑暗周期的微妙珊瑚运动。我们使用数字图像相关性和光流技术来量化和表征不同光条件下的微小珊瑚动作。此外,作为可视化工具,运动放大算法在不同频率的珊瑚运动中放大了珊瑚的运动,从而明确显示了珊瑚运动的独特动态模式。我们在不同的光条件下量化并比较了珊瑚运动的位移,应变,光流和模式。我们的方法通过宏观数字成像为微观的珊瑚运动和行为提供了前所未有的见解,从而为珊瑚研究社区提供了有用的经验工具集。

Coral reef ecosystems support significant biological activities and harbor huge diversity, but they are facing a severe crisis driven by anthropogenic activities and climate change. An important behavioral trait of the coral holobiont is coral motion, which may play an essential role in feeding, competition, reproduction, and thus survival and fitness. Therefore, characterizing coral behavior through motion analysis will aid our understanding of basic biological and physical coral functions. However, tissue motion in the stony scleractinian corals that contribute most to coral reef construction are subtle and may be imperceptible to both the human eye and commonly used imaging techniques. Here we propose and apply a systematic approach to quantify and visualize subtle coral motion across a series of light and dark cycles in the scleractinian coral Montipora capricornis. We use digital image correlation and optical flow techniques to quantify and characterize minute coral motions under different light conditions. In addition, as a visualization tool, motion magnification algorithm magnifies coral motions in different frequencies, which explicitly displays the distinctive dynamic modes of coral movement. We quantified and compared the displacement, strain, optical flow, and mode shape of coral motion under different light conditions. Our approach provides an unprecedented insight into micro-scale coral movement and behavior through macro-scale digital imaging, thus offering a useful empirical toolset for the coral research community.

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