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This paper presents a deep learning approach for image retrieval and pattern spotting in digital collections of historical documents. First, a region proposal algorithm detects object candidates in the document page images. Next, deep learning models are used for feature extraction, considering two distinct variants, which provide either real-valued or binary code representations. Finally, candidate images are ranked by computing the feature similarity with a given input query. A robust experimental protocol evaluates the proposed approach considering each representation scheme (real-valued and binary code) on the DocExplore image database. The experimental results show that the proposed deep models compare favorably to the state-of-the-art image retrieval approaches for images of historical documents, outperforming other deep models by 2.56 percentage points using the same techniques for pattern spotting. Besides, the proposed approach also reduces the search time by up to 200x and the storage cost up to 6,000x when compared to related works based on real-valued representations.