论文标题

EOCSA:预测具有整个幻灯片病理学图像的上皮卵巢癌的预后

EOCSA: Predicting Prognosis of Epithelial Ovarian Cancer with Whole Slide Histopathological Images

论文作者

Liu, Tianling, Su, Ran, Sun, Changming, Li, Xiuting, Wei, Leyi

论文摘要

卵巢癌是威胁世界上女性的最严重的癌症之一。作为卵巢癌最常见的亚型,上皮卵巢癌(EOC)在各种妇科癌症中的死亡率率相当高,预后较差。生存分析结果能够为医生提供治疗建议。近年来,随着医学成像技术的发展,已经提出了基于病理图像的生存预测方法。在这项研究中,我们设计了一个名为EOCSA的深框架,该框架基于病理全幻灯片图像(WSIS)来分析EOC患者的预后。具体而言,我们首先从WSIS中随机提取斑块,并将其分组为多个群集。接下来,我们开发了一个名为DeepConvattentionsUrv(DCAS)的生存预测模型,该模型能够提取斑块级特征,去除了较少的歧视性簇,并精确地预测了EOC的生存。特别是,使用引导注意力,空间注意力和神经元注意机制来改善特征提取的性能。然后,通过我们的体重计算方法产生了患者级的特征,并最终使用拉索-Cox模型估算了生存时间。拟议的EOCSA在预测EOC的预后方面具有高效和有效性,并且DCA可确保可以提取更有信息和歧视性的特征。据我们所知,我们的工作是第一个基于WSIS和DEAP神经网络技术分析EOC生存的工作。实验结果表明,我们提出的框架已经达到了0.980 C索引的最先进性能。该方法的实施可以在https://github.com/ransulab/eocprognosis上找到。

Ovarian cancer is one of the most serious cancers that threaten women around the world. Epithelial ovarian cancer (EOC), as the most commonly seen subtype of ovarian cancer, has rather high mortality rate and poor prognosis among various gynecological cancers. Survival analysis outcome is able to provide treatment advices to doctors. In recent years, with the development of medical imaging technology, survival prediction approaches based on pathological images have been proposed. In this study, we designed a deep framework named EOCSA which analyzes the prognosis of EOC patients based on pathological whole slide images (WSIs). Specifically, we first randomly extracted patches from WSIs and grouped them into multiple clusters. Next, we developed a survival prediction model, named DeepConvAttentionSurv (DCAS), which was able to extract patch-level features, removed less discriminative clusters and predicted the EOC survival precisely. Particularly, channel attention, spatial attention, and neuron attention mechanisms were used to improve the performance of feature extraction. Then patient-level features were generated from our weight calculation method and the survival time was finally estimated using LASSO-Cox model. The proposed EOCSA is efficient and effective in predicting prognosis of EOC and the DCAS ensures more informative and discriminative features can be extracted. As far as we know, our work is the first to analyze the survival of EOC based on WSIs and deep neural network technologies. The experimental results demonstrate that our proposed framework has achieved state-of-the-art performance of 0.980 C-index. The implementation of the approach can be found at https://github.com/RanSuLab/EOCprognosis.

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